PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006140001
Common NameGSBRNA2T00006140001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 252aa    MW: 25888.1 Da    PI: 8.2853
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006140001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39341341100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdP+yG+v+ i++lqqq+ +
  GSBRNA2T00006140001  34 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNVSKLLLHIPVHRRADAVVTICYEAQARIRDPIYGCVANIFALQQQVVN 123
                          7***********************998899************************************************************ PP

               DUF260  90 lkaelallkee 100
                          l+ae+++l+++
  GSBRNA2T00006140001 124 LQAEVSYLQAH 134
                          ******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.76333135IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-3934132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSGGGNTITS VGGGGCGGGS SSGGGGSSGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG  60
SAYFAAVHKV FGASNVSKLL LHIPVHRRAD AVVTICYEAQ ARIRDPIYGC VANIFALQQQ  120
VVNLQAEVSY LQAHLASLEL PQPQTRPPPL TQPQPLFFTP PPPLSITDLP ASVSPYDLAS  180
IVDPPTSWAT QQRRFVDPRN QYGGSSSSSS AAVGLGGGNS DLQALAHELL HRQGSPPPAA  240
TDGSPSRSMS R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.143940.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006140001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894980.0AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635009.10.0PREDICTED: LOB domain-containing protein 18
SwissprotO221311e-118LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A078G1R30.0A0A078G1R3_BRANA; BnaC04g04180D protein
STRINGBra004910.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-108LOB domain-containing protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]